PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015882467.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family LBD
Protein Properties Length: 197aa    MW: 21232.8 Da    PI: 7.3694
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015882467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260144.33.5e-4515113199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+
  XP_015882467.1  15 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELD 109
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_015882467.1 110 AANA 113
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.85214115IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-4415112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASSSSSSSS SYNSPCAACK FLRRKCMPGC IFAPYFPPEE PQKFANVHKI FGASNVTKLL  60
NELLPHQRED AVNSLAYEAE ARVRDPVYGC VGAISFLQRQ VQRLQKELDA ANADLIRFAC  120
NEIPTPAALP PPQPLMAPRH RPLEYGGGRR LGNEGGGAGF YSNSANFSLP YPLQWSTDHN  180
PSGDINEGSG GGGDGNM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00581DAPTransfer from AT5G63090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882467.11e-145PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_015882471.11e-145PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML44e-74LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A061FUD51e-99A0A061FUD5_THECC; Lateral organ boundaries domain family protein
STRINGPOPTR_0015s09370.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.49e-73LBD family protein